Sitemap
A compact index of the main pages and collection entries on this site. An XML sitemap is also available.
Pages
portfolio
Predictive cancer epigenomics
Deep learning models for estimating epigenetic treatment-induced transposable element expression changes from pre-treatment genomic and epigenomic data.
Computational public-health modeling
COVID-19 forecasting, geospatial visualization, cross-country survey analysis, and social-media mining for pandemic response.
Remote sensing and environmental machine learning
Machine learning for flood detection, Sentinel-1 to NDWI modeling, and GLDAS groundwater storage downscaling.
Single-cell communication and cellular dynamics
Cell dynamics models that integrate intercellular communication, pathway-level features, and single-cell RNA-seq analysis pipelines.
publications
Analyzing predictors of control measures and psychosocial problems associated with the COVID-19 pandemic
Published in Behavioral Sciences, 2021
Evidence from eight countries on COVID-19 control measures and psychosocial problems.
Recommended citation: Jony, S. S. R., et al. (2021). Analyzing predictors of control measures and psychosocial problems associated with the COVID-19 pandemic: Evidence from eight countries. Behavioral Sciences, 11(8), 106.
The disproportionate impact of COVID-19 among undocumented immigrants and ethnic minorities in the US
Published in International Journal of Environmental Research and Public Health, 2021
Analysis of how COVID-19 disproportionately affected vulnerable and minority communities in the United States.
Recommended citation: Jony, S. S. R., et al. (2021). The disproportionate impact of COVID-19 among undocumented immigrants and ethnic minorities in the US. International Journal of Environmental Research and Public Health, 18(23), 12708.
Linking tweets towards geo-localized policies: COVID-19 perspective
Published in Studies in Health Technology and Informatics, 2022
A study of COVID-19-related social media signals and geo-localized policy insights.
Recommended citation: Jony, S. S. R., et al. (2022). Linking tweets towards geo-localized policies: COVID-19 perspective. Studies in Health Technology and Informatics, 290, 709-713.
An agent-based model for COVID-19 in Bangladesh
Under review, 2022
A COVID-19 forecasting model tailored for Bangladesh and informed by strain-specific dynamics.
Recommended citation: Jony, S. S. R., et al. (2022). An agent-based model for COVID-19 in Bangladesh. Manuscript under review.
An exploratory study of online job portal data of the ICT sector in Bangladesh
Published in Education Sciences, 2022
Analysis of ICT labor and skill demand in Bangladesh with implications for curriculum reform.
Recommended citation: Jony, S. S. R., et al. (2022). An exploratory study of online job portal data of the ICT sector in Bangladesh: Analysis, recommendations, and preliminary implications for ICT curriculum reform. Education Sciences, 12(7), 423.
CC-Tempo: A cell-cell communication-aware model of cellular dynamics
Under review, 2024
A model of cellular dynamics that incorporates intercellular communication into differentiation trajectories.
Recommended citation: Jony, S. S. R., et al. (2024). CC-Tempo: A cell-cell communication-aware model of cellular dynamics. Manuscript under review.
GroundHog: Revolutionizing GLDAS groundwater storage downscaling for enhanced recharge estimation in Bangladesh
Under review, 2025
A groundwater storage downscaling approach for improved recharge estimation in Bangladesh.
Recommended citation: Jony, S. S. R., et al. (2025). GroundHog: Revolutionizing GLDAS groundwater storage downscaling for enhanced recharge estimation in Bangladesh. Manuscript under review.
A light-weight model to generate NDWI from Sentinel-1
Under review, 2025
A remote-sensing model for deriving NDWI-like signals from Sentinel-1 observations.
Recommended citation: Jony, S. S. R., et al. (2025). A light-weight model to generate NDWI from Sentinel-1. Manuscript under review.
Leveraging complementary attention maps in Vision Transformers for OCT image analysis
Published in IEEE International Conference on Image Processing, 2025
A Vision Transformer approach for ophthalmic marker detection in 3D OCT images.
Recommended citation: Jony, S. S. R., et al. (2025). Leveraging complementary attention maps in Vision Transformers for OCT image analysis. IEEE International Conference on Image Processing.
TET2 and TET3 safeguard the epigenetic identity and immune surveillance of group 1 innate lymphoid cells
Under review, 2026
A study of epigenetic identity and immune surveillance in group 1 innate lymphoid cells.
Recommended citation: Jony, S. S. R., et al. (2026). TET2 and TET3 safeguard the epigenetic identity and immune surveillance of group 1 innate lymphoid cells. Manuscript under review.
talks
Linking tweets towards geo-localized policies: COVID-19 perspective
Published:
Oral presentation on COVID-19-related social media analysis and geo-localized policy insights.
An exploratory study of online job portal data of the ICT sector in Bangladesh
Published:
Oral presentation on ICT sector labor-market analysis, recommendations, and preliminary implications for computer and software engineering curriculum reform.
Modeling epigenetic drug-induced transposable element expression from pre-treatment genomic and epigenomic landscape
Published:
Poster presentation on modeling epigenetic drug-induced transposable element expression from pre-treatment genomic and epigenomic landscapes.
teaching
Graduate Mentor for Undergraduate Research
Mentorship, Department of Computer Science & Engineering, Bangladesh University of Engineering & Technology, 2023
Guided undergraduate students in thesis projects focused on omics data, practical analysis tools, and research execution. Served as graduate mentor for the IEEE VIP CUP 2023 winning team in Kuala Lumpur, Malaysia.
BIOL 5495: Computational Molecular Biology
Graduate Teaching Assistant, Department of Biology, WashU Medicine, 2025
Graduate teaching assistant for BIOL 5495: Computational Molecular Biology during Fall 2025.
travel
The Last Trip to Bandarban?
Published:
A place that will always be special to my heart